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TL()
|
Transmission loss |
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compare_models()
|
Benchmark results |
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compile_rjMCMC()
|
Dose-response curves |
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configure_rjMCMC()
|
Initial configuration |
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create_groups()
|
Create groupings |
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create_report()
|
Generate report |
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espresso
|
Bayesian inference for multi-species behavioural dose-response functions |
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example_brs
|
Example dataset |
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gibbs()
|
Posterior inference for dose-response models |
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hexa2hex()
|
Mimick transparent colours |
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houser_dose
|
Dose-response curve for California sea lions and bottlenose dolphins |
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jacobson_dose
|
Dose-response curve for Blainville's beaked whales from the Pacific Missile Range Facility (PMRF) |
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likelihood()
|
The Truncated Normal Distribution |
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moretti_dose
|
Dose-response curve for Blainville's beaked whales |
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normal_prior()
|
Normal prior on covariates |
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plot(<dose_response>)
|
Dose-response curves |
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plot(<gvs>)
|
Diagnostic plots |
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plot(<rjtrace>)
|
Diagnostic plots |
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plot_phase()
|
Compare dose-response functions |
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print(<dose_response>)
|
Print method for objects of class dose_response |
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print(<gvs>)
|
Print method for objects of class gvs |
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print(<rjtrace>)
|
Print method for objects of class rjtrace |
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prob_covariates()
|
Posterior inclusion probabilities for contextual covariates |
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propdens_ff()
|
Proposal densities for functional form jumps. |
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propdens_mh()
|
Proposal densities for between-model jumps |
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propdens_rj()
|
Proposal densities for between-model jumps |
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proposal_ff()
|
Proposal for jumps between functional forms |
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proposal_rj()
|
Proposal for between-model jumps |
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proposal_t.ij()
|
Proposal for within-model jumps |
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propose_jump()
|
Proposal for between-model jumps |
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range_finder()
|
Range finder |
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read_data()
|
Import dose-response data |
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run_rjMCMC()
|
Reversible jump MCMC |
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setup_rjMCMC()
|
Set up the rjMCMC sampler |
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simulate_data()
|
Generate a simulated dataset |
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species_brs
|
Cetacean species |
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summary(<brsdata>)
|
Summarise dose-response data |
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summary(<gvs>)
|
Some diagnostics for fitted dose-response models |
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summary(<rjtrace>)
|
Some diagnostics for fitted dose-response models |
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trace_rjMCMC()
|
Extract trace |
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undo_groups()
|
Dissolve groupings |
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uniform_prior()
|
Uniform prior |
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update_rjMCMC()
|
Update sampler |