Diagnostic plots

Generate trace, density, and autocorrelation plots from a gvs object.

# S3 method for gvs
plot(gvs.dat, param.name = NULL, autocorr = FALSE, individual = FALSE)

Arguments

gvs.dat	Gibbs Variable Selection object, as returned by gibbs.
param.name	Parameter name(s). Defaults to NULL, which returns plots for all parameters in the model.
autocorr	Logical. Whether to output chain autocorrelation plots.
individual	Logical. If TRUE, separate density lines will be plotted for each chain. If FALSE, one density line will be plotted for all chains.

Details

Adapted from Casey Youngflesh's function MCMCtrace.

See also

run_rjMCMC trace_rjMCMC

Author

Phil J. Bouchet